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1

The MARTINI Force Field: Coarse Grained Model for Biomolecular Simulations

Marrink, Siewert J., Risselada, H. Jelger, Yefimov, Serge, Tieleman, D. Peter, de Vries, Alex H.

Journal:

Journal of Physical Chemistry B

Year:

2007

Language:

english

File:

PDF, 1.58 MB

english, 2007

2

The 2018 biomembrane curvature and remodeling roadmap

Bassereau, Patricia, Jin, Rui, Baumgart, Tobias, Deserno, Markus, Dimova, Rumiana, Frolov, Vadim A, Bashkirov, Pavel V, Grubmüller, Helmut, Jahn, Reinhard, Risselada, H Jelger, Johannes, Ludger, Kozlo

Journal:

Journal of Physics D Applied Physics

Year:

2018

Language:

english

File:

PDF, 7.76 MB

english, 2018

3

Liquids relax and unify strain in graphene

Belyaeva, Liubov A., Jiang, Lin, Soleimani, Alireza, Methorst, Jeroen, Risselada, H. Jelger, Schneider, GrÃ©gory F.

Journal:

Nature Communications

Year:

2020

Language:

english

File:

PDF, 1.34 MB

english, 2020

4

Caught in the Act: Visualization of SNARE-Mediated Fusion Events in Molecular Detail

Herre Jelger Risselada, Carsten Kutzner, Prof. Helmut Grubmüller

Journal:

Year:

2011

Language:

english

File:

PDF, 1.39 MB

english, 2011

5

Corrigendum: Caught in the Act: Visualization of SNARE-Mediated Fusion Events in Molecular Detail

Herre Jelger Risselada, Carsten Kutzner, Prof. Helmut Grubmüller

Journal:

Year:

2011

Language:

english

File:

PDF, 190 KB

english, 2011

6

Reconstruction of atomistic details from coarse-grained structures

Rzepiela, Andrzej J., Schäfer, Lars V., Goga, Nicolae, Risselada, H. Jelger, De Vries, Alex H., Marrink, Siewert J.

Journal:

Journal of Computational Chemistry

Year:

2010

Language:

english

File:

PDF, 688 KB

english, 2010

7

Simulation of gel phase formation and melting in lipid bilayers using a coarse grained model

Siewert J. Marrink, Jelger Risselada, Alan E. Mark

Journal:

Chemistry and Physics of Lipids

Year:

2005

Language:

english

File:

PDF, 1.26 MB

english, 2005

8

Membrane protein sequestering by ionic protein–lipid interactions

van den Bogaart, Geert, Meyenberg, Karsten, Risselada, H. Jelger, Amin, Hayder, Willig, Katrin I., Hubrich, Barbara E., Dier, Markus, Hell, Stefan W., Grubmüller, Helmut, Diederichsen, Ulf

Journal:

Year:

2011

Language:

english

File:

PDF, 1.69 MB

english, 2011

9

How SNARE molecules mediate membrane fusion: Recent insights from molecular simulations

Herre Jelger Risselada, Helmut Grubmüller

Journal:

Current Opinion in Structural Biology

Year:

2012

Language:

english

File:

PDF, 3.91 MB

english, 2012

10

3D Pressure Field in Lipid Membranes and Membrane-Protein Complexes

Ollila, O. H. Samuli, Risselada, H. Jelger, Louhivuori, Martti, Lindahl, Erik, Vattulainen, Ilpo, Marrink, Siewert J.

Journal:

Physical Review Letters

Year:

2009

Language:

english

File:

PDF, 533 KB

english, 2009

11

Curvature effects on lipid packing and dynamics in liposomes revealed by coarse grained molecular dynamics simulations

Risselada, H. Jelger, Marrink, Siewert J.

Journal:

Physical Chemistry Chemical Physics

Year:

2009

Language:

english

File:

PDF, 1.40 MB

english, 2009

12

Curvature-Dependent Elastic Properties of Liquid-Ordered Domains Result in Inverted Domain Sorting on Uniaxially Compressed Vesicles

Risselada, H. Jelger, Marrink, Siewert Jan, Müller, Marcus

Journal:

Physical Review Letters

Year:

2011

Language:

english

File:

PDF, 357 KB

english, 2011

13

Application of Mean Field Boundary Potentials in Simulations of Lipid Vesicles

Risselada, H. Jelger, Mark, Alan E., Marrink, Siewert J.

Journal:

Journal of Physical Chemistry B

Year:

2008

Language:

english

File:

PDF, 2.08 MB

english, 2008

14

Fast Roads and Dead Ends in SNARE-Dependent Membrane Fusion

Risselada, Herre Jelger, Grubmüller, Helmut

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 36 KB

english, 2011

15

MscL Gating In Liposomes

Louhivuori, Martti, Risselada, Jelger, van der Giessen, Erik, Marrink, Siewert-Jan

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 58 KB

english, 2009

16

Membrane Fusion Enhanced!

Risselada, Herre Jelger, Grubmueller, Helmut

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 86 KB

english, 2010

17

Fusion Proteins - Different Tools for Different Jobs?

Risselada, Herre Jelger, Müller, Marcus, Grubmüller, Helmut

Journal:

Biophysical Journal

Year:

2013

Language:

english

File:

PDF, 132 KB

english, 2013

18

Quantitative Membrane Bending Energies at Extreme Curvatures from Molecular Dynamics Simulations

Bubnis, Gregory, Risselada, H. Jelger, Grubmueller, Helmut

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 105 KB

english, 2012

19

Stability of Asymmetric Lipid Bilayers Assessed by Molecular Dynamics Simulations

Esteban-Martín, Santi, Risselada, H. Jelger, Salgado, Jesús, Marrink, Siewert J.

Journal:

Journal of the American Chemical Society

Year:

2009

Language:

english

File:

PDF, 4.17 MB

english, 2009

20

Synaptotagmin-1 may be a distance regulator acting upstream of SNARE nucleation

van den Bogaart, Geert, Thutupalli, Shashi, Risselada, Jelger H, Meyenberg, Karsten, Holt, Matthew, Riedel, Dietmar, Diederichsen, Ulf, Herminghaus, Stephan, Grubmüller, Helmut, Jahn, Reinhard

Journal:

Nature Structural and Molecular Biology

Year:

2011

Language:

english

File:

PDF, 1.52 MB

english, 2011

21

The freezing process of small lipid vesicles at molecular resolution

Risselada, H. Jelger, Marrink, Siewert J.

Journal:

Year:

2009

Language:

english

File:

PDF, 2.92 MB

english, 2009

22

Membrane lateral structure: the influence of immobilized particles on domain size

Fischer, Timo, Jelger Risselada, H., Vink, Richard L. C.

Journal:

Physical Chemistry Chemical Physics

Year:

2012

Language:

english

File:

PDF, 5.31 MB

english, 2012

23

Free Energy Landscape of Rim-Pore Expansion in Membrane Fusion

Risselada, Herre Jelger, Smirnova, Yuliya, Grubmüller, Helmut

Journal:

Biophysical Journal

Year:

2014

Language:

english

File:

PDF, 2.51 MB

english, 2014

24

Publisher’s Note: Curvature-Dependent Elastic Properties of Liquid-Ordered Domains Result in Inverted Domain Sorting on Uniaxially Compressed Vesicles [Phys. Rev. Lett. 106 , 148102 (2011)]

Risselada, H. Jelger, Marrink, Siewert Jan, Müller, Marcus

Journal:

Physical Review Letters

Year:

2011

File:

PDF, 23 KB

2011

25

Simulations Move Toward a Cure for Viral Diseases

Risselada, Herre Jelger

Journal:

Year:

2015

Language:

english

File:

PDF, 389 KB

english, 2015

26

Phosphatidylinositol 4,5-bisphosphate clusters act as molecular beacons for vesicle recruitment

Honigmann, Alf, van den Bogaart, Geert, Iraheta, Emilio, Risselada, H Jelger, Milovanovic, Dragomir, Mueller, Veronika, Müllar, Stefan, Diederichsen, Ulf, Fasshauer, Dirk, Grubmüller, Helmut, Hell, St

Journal:

Nature Structural and Molecular Biology

Year:

2013

Language:

english

File:

PDF, 2.21 MB

english, 2013

27

PspF-binding domain PspA 1-144 and the PspA·F complex: New insights into the coiled-coil-dependent regulation of AAA+ proteins

Osadnik, Hendrik, Schöpfel, Michael, Heidrich, Eyleen, Mehner, Denise, Lilie, Hauke, Parthier, Christoph, Risselada, H. Jelger, Grubmüller, Helmut, Stubbs, Milton T., Brüser, Thomas

Journal:

Molecular Microbiology

Year:

2015

Language:

english

File:

PDF, 863 KB

english, 2015

28

Gold-Induced Fibril Growth: The Mechanism of Surface-Facilitated Amyloid Aggregation

Gladytz, Anika, Abel, Bernd, Risselada, Herre Jelger

Journal:

Angewandte Chemie International Edition

Year:

2016

Language:

english

File:

PDF, 2.68 MB

english, 2016

29

Exploiting Lipid Permutation Symmetry to Compute Membrane Remodeling Free Energies

Bubnis, Greg, Risselada, Herre Jelger, Grubmüller, Helmut

Journal:

Physical Review Letters

Year:

2016

Language:

english

File:

PDF, 605 KB

english, 2016

30

Steric hindrance of SNARE transmembrane domain organization impairs the hemifusion‐to‐fusion transition

D'Agostino, Massimo, Risselada, Herre Jelger, Mayer, Andreas

Journal:

Year:

2016

Language:

english

File:

PDF, 3.77 MB

english, 2016

31

Membrane Fusion Stalks and Lipid Rafts: A Love-Hate Relationship

Risselada, Herre Jelger

Journal:

Biophysical Journal

Year:

2017

Language:

english

File:

PDF, 2.62 MB

english, 2017

32

Gold lässt Fibrillen wachsen: der Mechanismus der oberflächenunterstützten Amyloid-Aggregation

Gladytz, Anika, Abel, Bernd, Risselada, Herre Jelger

Journal:

Angewandte Chemie

Year:

2016

Language:

german

File:

PDF, 3.21 MB

german, 2016

33

A tethering complex drives the terminal stage of SNARE-dependent membrane fusion

D’Agostino, Massimo, Risselada, Herre Jelger, Lürick, Anna, Ungermann, Christian, Mayer, Andreas

Journal:

Year:

2017

Language:

english

File:

PDF, 8.94 MB

english, 2017

34

TatBC-Independent TatA/Tat Substrate Interactions Contribute to Transport Efficiency

Taubert, Johannes, Hou, Bo, Risselada, H. Jelger, Mehner, Denise, Lünsdorf, Heinrich, Grubmüller, Helmut, Brüser, Thomas, Cascales, Eric

Journal:

Year:

2015

Language:

english

File:

PDF, 6.06 MB

english, 2015

35

SNARE‐mediated membrane fusion arrests at pore expansion to regulate the volume of an organelle

D'Agostino, Massimo, Risselada, Herre Jelger, Endter, Laura J, Comte‐Miserez, Véronique, Mayer, Andreas

Journal:

The EMBO Journal

Year:

2018

Language:

english

File:

PDF, 8.21 MB

english, 2018

36

Impact of nanoparticles on amyloid peptide and protein aggregation: a review with a focus on gold nanoparticles

John, Torsten, Gladytz, Anika, Kubeil, Clemens, Martin, Lisandra L, Risselada, Herre Jelger, Abel, Bernd

Journal:

Year:

2018

Language:

english

File:

PDF, 2.47 MB

english, 2018

37

Cholesterol: The Plasma Membrane’s Constituent that Chooses Sides

Risselada, Herre Jelger

Journal:

Biophysical Journal

Year:

2019

Language:

english

File:

PDF, 468 KB

english, 2019

38

Growth, Polymorphism, and Spatially Controlled Surface Immobilization of Biotinylated Variants of IAPP 21-27 Fibrils

John, Torsten, Bandak, Juhaina, Sarveson, Nilushiya, Hackl, Claudia, Risselada, Herre Jelger, Prager, Andrea, Elsner, Christian, Abel, Bernd

Journal:

Biomacromolecules

Year:

2019

Language:

english

File:

PDF, 9.60 MB

english, 2019

39

Growth, Polymorphism, and Spatially Controlled Surface Immobilization of Biotinylated Variants of IAPP 21-27 Fibrils

John, Torsten, Bandak, Juhaina, Sarveson, Nilushiya, Hackl, Claudia, Risselada, Herre Jelger, Prager, Andrea, Elsner, Christian, Abel, Bernd

Journal:

Biomacromolecules

Year:

2019

File:

PDF, 9.60 MB

2019

40

Fusion Pores Live on the Edge

Blokhuis, Edgar M., D'agostino, Massimo, Mayer, Andreas, Risselada, Herre Jelger

Journal:

The Journal of Physical Chemistry Letters

Year:

2020

Language:

english

File:

PDF, 2.14 MB

english, 2020

41

Membrane Thinning Induces Sorting of Lipids and the Amphipathic Lipid Packing Sensor (ALPS) Protein Motif

van Hilten, Niek, Stroh, Kai Steffen, Risselada, Herre Jelger

Journal:

Frontiers in Physiology

Year:

2020

File:

PDF, 986 KB

2020

42

Density Field Thermodynamic Integration (DFTI): A âSoftâ Approach to Calculate the Free Energy of Surfactant Self-Assemblies

Endter, Laura Josefine, Smirnova, Yuliya, Risselada, Herre Jelger

Journal:

Journal of Physical Chemistry B

Year:

2020

File:

PDF, 5.55 MB

2020

43

Where are those lipid nano rings?

Endter, Laura Josefine, Risselada, Herre Jelger

Journal:

Journal of Colloid and Interface Science

Year:

2020

File:

PDF, 2.39 MB

2020